PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn342201
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 737aa    MW: 81234.6 Da    PI: 6.5496
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn342201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68e-17238330199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 f+kvl+ sd+++ grlvlpk +ae       e++ l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l+++++
  Achn342201 238 FEKVLSASDAGRIGRLVLPKACAEP------EGVPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLLMGFR 328
                 99********************943......3445***************9989999999***9.********************987.8888888887 PP

                 -S CS
          B3  98 rk 99 
                 ++
  Achn342201 329 KA 330
                 65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-24230340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-15235329IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-20236329No hitNo description
SMARTSM010195.8E-17238331IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983238331IPR003340B3 DNA binding domain
PfamPF023626.6E-14238330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MGALPKELAN QTSNDENPKG LSMSTVNKNS EKQLTSVDKV DGDNVTEMNQ EQLVSSEVRN  60
GLKDLLPSHN DDAHGGQIKE EEVLPHRGEV GNMSSTNFNQ VSIGPSDAAK VAIYKANMGI  120
KDVYESLAQT NLTIALASPS GNSNPFSGAV VEERELGKTI SSFQQVSRSH HLLPKPPKSI  180
LATGLETNAS VGPQMRVARP PAEGRLKNQL LPRYWPRITD QELQLISGDS NSTIVPLFEK  240
VLSASDAGRI GRLVLPKACA EPEGVPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC  300
IQSMQLQAGD TVTFSRIDPE GKLLMGFRKA SNAIAMQSSA HLNALSKPLN SAGGDFSWHI  360
MEKHVSDTKD GLLLPSMLAP ERKRSRNIGS KSKRFLIDSQ DAMELKLTWE EAQDMLRPPL  420
SEKPSILTIE DHEFEEYEEP PVFAKRSIFT ARSSGCSCSA PDELSPRELE YLLKLNKEFK  480
KQRMLMSHKM VQEHDSATLD ALPNTAVLGD NASDPGGASV ATTTKHPRHR PGCSCIVCIQ  540
PPSGKGKHKP TCTCNVCMTV KRRFKTLMMR KKKRQTEREA EIAQRNHYLW GSKDEAEVDS  600
TITHHDPPAN KGILVNELQL RDQINNLSHK TPEIGKGGLD LNSDPEREEH LHQGSTRVSM  660
MSLLQVASLP LETYLKQNGL TSLISEQQES SGSQSLPQAT TGESEGPVHE DHCVAPVVQE  720
HDSRDDELDN SRNDPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-1423733313120DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1560571KRRFKTLMMRKK
2560573KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653338.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X3
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A061EIG60.0A0A061EIG6_THECC; Transcription factor, putative isoform 3
STRINGVIT_08s0058g01300.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1